PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.898CQ
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 415aa    MW: 47891.9 Da    PI: 8.6744
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.898CQgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.84.5e-067091223
                 EETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                 +C+ Cg sF+ + +L +H+++H
  Aradu.898CQ 70 TCQQCGASFKKPAYLLQHMQSH 91
                 6*******************99 PP

2zf-C2H216.81.9e-05135159123
                  EEET..TTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                  y+C   dC  s++rk++L+rH+  H
  Aradu.898CQ 135 YVCMvdDCQASYRRKDHLNRHLLQH 159
                  899999***************9887 PP

3zf-C2H210.80.0015164189123
                  EEET..TTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                  +kCp  +C+  Fs k n+ rH +  H
  Aradu.898CQ 164 FKCPmeNCNLIFSIKGNMARHVKEiH 189
                  89********************9988 PP

4zf-C2H219.62.5e-06203227123
                  EEET..TTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                  ++Cp   Cgk+F+  s L++H  +H
  Aradu.898CQ 203 FVCPetGCGKVFKFASKLRKHADSH 227
                  89*******************9888 PP

5zf-C2H214.50.0001307332123
                  EEET..TTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                  +kC+   C+  Fs+ksnL++H +  H
  Aradu.898CQ 307 FKCEfkGCSCKFSSKSNLVTHKKAvH 332
                  89*******************99877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355272447IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.0116996IPR007087Zinc finger, C2H2
SMARTSM003550.0096991IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.29E-87091No hitNo description
Gene3DG3DSA:3.30.160.602.1E-47094IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002807191IPR007087Zinc finger, C2H2
SuperFamilySSF576672.29E-8130159No hitNo description
Gene3DG3DSA:3.30.160.604.0E-10130161IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.723135164IPR007087Zinc finger, C2H2
SMARTSM003550.0036135159IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280137159IPR007087Zinc finger, C2H2
SuperFamilySSF576673.08E-6162190No hitNo description
Gene3DG3DSA:3.30.160.602.3E-4162190IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0086164189IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.162164194IPR007087Zinc finger, C2H2
PROSITE patternPS000280166189IPR007087Zinc finger, C2H2
SuperFamilySSF576675.59E-5197227No hitNo description
Gene3DG3DSA:3.30.160.609.3E-9201229IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0047203227IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.242203227IPR007087Zinc finger, C2H2
PROSITE patternPS000280205227IPR007087Zinc finger, C2H2
SMARTSM003554.3249274IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280251274IPR007087Zinc finger, C2H2
SMARTSM0035526277298IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.0E-6288329IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.43E-9288344No hitNo description
SMARTSM003550.003307332IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.256307337IPR007087Zinc finger, C2H2
PROSITE patternPS000280309332IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.7E-5331361IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003557.1338364IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280340364IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MPEMQMDEPM ESGERPVFKD IRRYFCEYCG ICRSKKILIT SHINSQHKDE LEKARAEGNN  60
EAHCEKPNNT CQQCGASFKK PAYLLQHMQS HSLEYTGKIF YSIIGLDGLV SGRETSCEAP  120
SRMPQSRFIQ DERPYVCMVD DCQASYRRKD HLNRHLLQHE GKTFKCPMEN CNLIFSIKGN  180
MARHVKEIHD EGSTSTNVES KQFVCPETGC GKVFKFASKL RKHADSHGKF SSNLIFFVNN  240
QIKLQSVDVV CLEPGCMKHF TNNQCLKEHI ESCHQYVTCD TCGSRQLKKN IKRHLRTHEA  300
DKSLAEFKCE FKGCSCKFSS KSNLVTHKKA VHFKEKPFVC GFPDCGLRFA YKHVRDKHEK  360
TGKHVFTHGD FEEADEQFRS RPRGGRKRVC PTVEMLVRKR VTPPSQLENL LFMQE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2i13_A1e-121213618183Aart
2i13_B1e-121213618183Aart
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015957075.10.0PREDICTED: transcription factor IIIA-like
SwissprotQ84MZ41e-132TF3A_ARATH; Transcription factor IIIA
TrEMBLV7BBS10.0V7BBS1_PHAVU; Uncharacterized protein
STRINGGLYMA02G46270.11e-180(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30693370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-123transcription factor IIIA